DNase-seq_ENCSR784GVR
DNase-seq ENCSR784GVR [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR784GVR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR784GVR [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF686LSV|/files/ENCFF686LSV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR784GVR | float |
DNase-seq_ENCSR784GVR |
DNase-seq ENCSR784GVR [biosample_summary="Homo sapiens with mild cognitive impairment; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0996, 14.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF236MLS.bed.gz | 547.06 KB | 02ec736fbebb8b8a3948288aefabf331 |
| ENCFF236MLS.bed.gz.dvc | 100.0 B | 67a7560ee12d55da72eeb4716f1f87f2 |
| ENCFF236MLS.tabix.bed.gz | 495.85 KB | c26a1d8182e43c08a0285159cdec1d29 |
| ENCFF236MLS.tabix.bed.gz.dvc | 106.0 B | 29c9e3b54b8cc75444a00bca2e416365 |
| ENCFF236MLS.tabix.bed.gz.tbi | 259.33 KB | bb849eac5fecff494f7c7c27570f4c75 |
| ENCFF236MLS.tabix.bed.gz.tbi.dvc | 110.0 B | d6d1d557f7d29308fb6d0c62c4559a7b |
| genomic_resource.yaml | 2.29 KB | 97d4ce5bc0a8b3a226efc2b2e96437df |
| genomic_resource_original.yaml | 2.14 KB | b67c87db21089c0f471d678423b91d74 |
| statistics/ |