DNase-seq_ENCSR783OCW
DNase-seq ENCSR783OCW [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)"]
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| Id: | DNase-seq/ENCSR783OCW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR783OCW [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF104MIA|/files/ENCFF104MIA/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.19. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN980BLX|/analyses/ENCAN980BLX/} has in progress subobject document {d0a8e48b-825f-4d42-bf34-39d987729133|/documents/d0a8e48b-825f-4d42-bf34-39d987729133/} audit_internal_action: Released analysis {ENCAN980BLX|/analyses/ENCAN980BLX/} has in progress subobject document {b21acfaf-eb62-4738-8a9f-f1b6484dc440|/documents/b21acfaf-eb62-4738-8a9f-f1b6484dc440/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR783OCW | float |
DNase-seq_ENCSR783OCW |
DNase-seq ENCSR783OCW [biosample_summary="Homo sapiens esophagus squamous epithelium tissue male adult (37 years)"]
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[0.0354, 11.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF839REP.bed.gz | 1.67 MB | 4ccd62e6e5dc17d3987e7cbce02c6c49 |
| ENCFF839REP.bed.gz.dvc | 101.0 B | 64e99f77e064ed82e788318ac2f70348 |
| ENCFF839REP.tabix.bed.gz | 1.6 MB | ab2ee27bbfcc7d580749454f3af0a6bc |
| ENCFF839REP.tabix.bed.gz.dvc | 107.0 B | 0bb682a4a3b8c45d232d862e4e38581c |
| ENCFF839REP.tabix.bed.gz.tbi | 195.07 KB | 13b15e55127646e4c979d0d9593e40a5 |
| ENCFF839REP.tabix.bed.gz.tbi.dvc | 110.0 B | d4489904b9eaa5a59d79c559e386762c |
| genomic_resource.yaml | 2.51 KB | df036a0cc3034216e9da88759577bacd |
| genomic_resource_original.yaml | 2.39 KB | e48031d94add27471d520b0d53aecad7 |
| statistics/ |