DNase-seq_ENCSR782SSS
DNase-seq ENCSR782SSS [biosample_summary="Homo sapiens stomach tissue male adult (34 years)"]
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| Id: | DNase-seq/ENCSR782SSS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR782SSS [biosample_summary="Homo sapiens stomach tissue male adult (34 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF974EMU|/files/ENCFF974EMU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.24. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN555AEW|/analyses/ENCAN555AEW/} has in progress subobject document {a6ea0a08-11e4-490b-97bd-475093df9aa7|/documents/a6ea0a08-11e4-490b-97bd-475093df9aa7/} audit_warning: Replicate 1_2 has no significant footprints detected. audit_warning: Alignment file {ENCFF974EMU|/files/ENCFF974EMU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 41097854 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR782SSS | float |
DNase-seq_ENCSR782SSS |
DNase-seq ENCSR782SSS [biosample_summary="Homo sapiens stomach tissue male adult (34 years)"]
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[0.196, 14.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF033LEB.bed.gz | 607.17 KB | 2b635f165939f652fc4b7d88515e0318 |
| ENCFF033LEB.bed.gz.dvc | 100.0 B | 6158e15f8ca9129925ed4320f4c0894c |
| ENCFF033LEB.tabix.bed.gz | 540.64 KB | 40c9c83e6a678afbaacb45bc3e05b1b6 |
| ENCFF033LEB.tabix.bed.gz.dvc | 106.0 B | 7636fa9900ef5afd1baed5f3266ed4fb |
| ENCFF033LEB.tabix.bed.gz.tbi | 321.44 KB | 47be7e520ef6c5defbe02a6666b397ad |
| ENCFF033LEB.tabix.bed.gz.tbi.dvc | 110.0 B | f0c7f614733e6718bfe8b13cbded6c0c |
| genomic_resource.yaml | 2.93 KB | e3efa170b66dde1d771397bed52cfb26 |
| genomic_resource_original.yaml | 2.83 KB | 3ae559c00ed1f0f996f80b4913bada24 |
| statistics/ |