| Id: | DNase-seq/ENCSR780ABS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR780ABS [biosample_summary="Homo sapiens activated T-helper 2 cell\ \ male adult (35 years) treated with 5 \u03BCg/mL Interferon-gamma antibody for\ \ 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2\ \ for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL Interleukin-4\ \ for 36 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (35 years) treated with 5 μg/mL Interferon-gamma antibody for 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2 for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL Interleukin-4 for 36 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF612MMX|/files/ENCFF612MMX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR780ABS | float |
DNase-seq_ENCSR780ABS |
DNase-seq ENCSR780ABS [biosample_summary="Homo sapiens activated T-helper 2 cell\ \ male adult (35 years) treated with 5 \u03BCg/mL Interferon-gamma antibody for\ \ 36 hours, anti-CD3 and anti-CD28 coated beads for 24 hours, 10 ng/mL Interleukin-2\ \ for 14 days, anti-CD3 and anti-CD28 coated beads for 14 days, 100 ng/mL Interleukin-4\ \ for 36 hours"]
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[0.0594, 29.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF953XXF.bed.gz | 592.41 KB | 2a5ac8de562457c3b7ad811d52fd820e |
| ENCFF953XXF.bed.gz.dvc | 100.0 B | fb74afa2bfbe713bb8571328805ee81d |
| ENCFF953XXF.tabix.bed.gz | 542.44 KB | 982463744d3bf6ccc1fe6252acfa31bc |
| ENCFF953XXF.tabix.bed.gz.dvc | 106.0 B | 39da0a115be230994ff7f9978ed40ab0 |
| ENCFF953XXF.tabix.bed.gz.tbi | 239.16 KB | 6e5824dfd087ad31c165694a6503ae0f |
| ENCFF953XXF.tabix.bed.gz.tbi.dvc | 110.0 B | f6eebf900f6648fc51e8d2c4de86b228 |
| genomic_resource.yaml | 3.34 KB | 0450a59a2a76f0746c7daa4e1d1b7127 |
| genomic_resource_original.yaml | 3.0 KB | 5d0e02f49f7593ccd9ef8c84fe629352 |
| statistics/ |