| Id: | DNase-seq/ENCSR778DWG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR778DWG [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours output_type: peaks audit_warning: Alignment file {ENCFF104EGX|/files/ENCFF104EGX/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 40114526 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR778DWG | float |
DNase-seq_ENCSR778DWG |
DNase-seq ENCSR778DWG [biosample_summary="Homo sapiens activated naive CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
|
 |
[0.375, 71.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF784JNN.bed.gz | 445.21 KB | dca207759e1b45daff0aefe82994a3ce |
| ENCFF784JNN.bed.gz.dvc | 100.0 B | da8cd00c14efea53b50f1ddfc9db1d14 |
| ENCFF784JNN.tabix.bed.gz | 404.33 KB | 0f5556e751498db6f5dcb12128a3e9e6 |
| ENCFF784JNN.tabix.bed.gz.dvc | 106.0 B | 3f730c4770f6ab3f1ea8723df9232fb8 |
| ENCFF784JNN.tabix.bed.gz.tbi | 203.46 KB | 8a66dc86710d7eb5ca8039a510744715 |
| ENCFF784JNN.tabix.bed.gz.tbi.dvc | 110.0 B | 160585635cc79cb36e32e984eba69293 |
| genomic_resource.yaml | 2.63 KB | 6bd98f7208264b629194463c0b7e320e |
| genomic_resource_original.yaml | 2.42 KB | be4b4d280b7a3969e8cfe974c1b0a332 |
| statistics/ |