DNase-seq_ENCSR775KLH
DNase-seq ENCSR775KLH [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue male adult (87 years)"]
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| Id: | DNase-seq/ENCSR775KLH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR775KLH [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue male adult (87 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (87 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF706MJM|/files/ENCFF706MJM/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR775KLH | float |
DNase-seq_ENCSR775KLH |
DNase-seq ENCSR775KLH [biosample_summary="Homo sapiens with Alzheimer''s disease; head of caudate nucleus tissue male adult (87 years)"]
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[0.0493, 21.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF691RHT.bed.gz | 944.48 KB | 6c59682847bc67ede6ecc8c31fb82e4e |
| ENCFF691RHT.bed.gz.dvc | 100.0 B | 957f0da0717072a9f12ce3c41b5b657a |
| ENCFF691RHT.tabix.bed.gz | 864.71 KB | 7199d0a706806de1b56b5b1d31878656 |
| ENCFF691RHT.tabix.bed.gz.dvc | 106.0 B | f90e862895b949f0fd63c13dce48a04e |
| ENCFF691RHT.tabix.bed.gz.tbi | 321.29 KB | 8428b6ded9287f66836f5b70c7e2df29 |
| ENCFF691RHT.tabix.bed.gz.tbi.dvc | 110.0 B | a81e732d47d39a5a46295d6aeee28226 |
| genomic_resource.yaml | 2.2 KB | c8ce06296fc99fd3bf01848ac562a844 |
| genomic_resource_original.yaml | 2.05 KB | 2c673a2139adac6280aa57b3a21f7ded |
| statistics/ |