Resource

Id DNase-seq/ENCSR774RCOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR774RCO [biosample_summary="Homo sapiens kidney tissue female embryo (105 days)"]
Description
Labels
  • accession: ENCSR774RCO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue female embryo (105 days)
  • date_created: 2015-09-16T21:42:51.107758+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR774RCO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR774RCO float

DNase-seq_ENCSR774RCO
DNase-seq ENCSR774RCO [biosample_summary="Homo sapiens kidney tissue female embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR774RCO [0.0446, 30.7]
n
51,428,701
mean
1.28
sd
2.15

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 514287011.60% 255125
chr1 4530679 1.82% 22370
chr2 4240921 1.75% 21200
chr3 3264826 1.65% 16335
chr4 2704612 1.42% 13634
chr5 2794001 1.54% 13951
chr6 3054692 1.79% 15154
chr7 2687403 1.69% 13372
chr8 2384247 1.64% 11874
chr9 2191505 1.58% 10876
chr10 2634957 1.97% 13048
chr11 2597254 1.92% 12829
chr12 2505682 1.88% 12377
chr13 1473474 1.29% 7431
chr14 1624352 1.52% 7936
chr15 1695313 1.66% 8258
chr16 1656922 1.83% 8197
chr17 2160587 2.60% 10464
chr18 1306942 1.63% 6479
chr19 1564401 2.67% 7450
chr20 1367133 2.12% 6771
chr21 591170 1.27% 2969
chr22 908750 1.79% 4489
chrX 1434139 0.92% 7363
chrY 54739 0.10% 298
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 255125 1 1060 201.58 200
global segment-length histogram

Files

Filename Size md5
ENCFF973MIR.bed.gz 2.71 MB d33d816c74e870689f94595f69a33608
ENCFF973MIR.tabix.bed.gz 2.48 MB c3d8949b35f18f238a2c65250ba32278
ENCFF973MIR.tabix.bed.gz.tbi 737.42 KB 0dfc825d080704b5f03326480def238f
genomic_resource.yaml 1.21 KB e0e6dff1e4265db2b7a5ae25cdf6f612
statistics/