Resource
| Id | DNase-seq/ENCSR772HUG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR772HUG [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (37 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_error: Alignment file {ENCFF998AKB|/files/ENCFF998AKB/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 19593033 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_error: Alignment file {ENCFF777VGM|/files/ENCFF777VGM/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 19464725 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN831YZE|/analyses/ENCAN831YZE/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR772HUG | float |
DNase-seq_ENCSR772HUG |
DNase-seq ENCSR772HUG [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (37 years)"]
|
 |
[2, 630] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9886970 | 0.31% | 65738 |
| chr1 | 932205 | 0.37% | 6205 |
| chr2 | 744260 | 0.31% | 4953 |
| chr3 | 614563 | 0.31% | 4080 |
| chr4 | 453986 | 0.24% | 3020 |
| chr5 | 501494 | 0.28% | 3329 |
| chr6 | 575252 | 0.34% | 3829 |
| chr7 | 508445 | 0.32% | 3377 |
| chr8 | 427541 | 0.29% | 2841 |
| chr9 | 404986 | 0.29% | 2693 |
| chr10 | 463947 | 0.35% | 3081 |
| chr11 | 501181 | 0.37% | 3330 |
| chr12 | 491431 | 0.37% | 3266 |
| chr13 | 253007 | 0.22% | 1681 |
| chr14 | 331466 | 0.31% | 2206 |
| chr15 | 332438 | 0.33% | 2207 |
| chr16 | 343440 | 0.38% | 2281 |
| chr17 | 471528 | 0.57% | 3141 |
| chr18 | 203785 | 0.25% | 1356 |
| chr19 | 470290 | 0.80% | 3133 |
| chr20 | 272201 | 0.42% | 1811 |
| chr21 | 110825 | 0.24% | 736 |
| chr22 | 201413 | 0.40% | 1341 |
| chrX | 266486 | 0.17% | 1769 |
| chrY | 10800 | 0.02% | 72 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 65738 | 10 | 450 | 150.4 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF365CRQ.bed.gz | 638.79 KB | a676251bba873004d3a8e0af116dad63 |
| ENCFF365CRQ.tabix.bed.gz | 550.54 KB | 2928d01ec9195f316d921f6cbb72e30c |
| ENCFF365CRQ.tabix.bed.gz.tbi | 338.24 KB | b918d21e3dafdd44ea39245f8fd030be |
| genomic_resource.yaml | 2.65 KB | a1415b757797dda41a4b118a7650848f |
| statistics/ |