DNase-seq_ENCSR772HUG
DNase-seq ENCSR772HUG [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (37 years)"]
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| Id: | DNase-seq/ENCSR772HUG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR772HUG [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_error: Alignment file {ENCFF998AKB|/files/ENCFF998AKB/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 19593033 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_error: Alignment file {ENCFF777VGM|/files/ENCFF777VGM/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 19464725 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN831YZE|/analyses/ENCAN831YZE/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR772HUG | float |
DNase-seq_ENCSR772HUG |
DNase-seq ENCSR772HUG [biosample_summary="Homo sapiens common myeloid progenitor, CD34-positive male adult (37 years)"]
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[2, 630] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF365CRQ.bed.gz | 638.79 KB | a676251bba873004d3a8e0af116dad63 |
| ENCFF365CRQ.bed.gz.dvc | 100.0 B | 8b18e6597b3bd460488c20bfa342f85d |
| ENCFF365CRQ.tabix.bed.gz | 550.54 KB | 2928d01ec9195f316d921f6cbb72e30c |
| ENCFF365CRQ.tabix.bed.gz.dvc | 106.0 B | 9af5154881f26c52548623dd66bb383e |
| ENCFF365CRQ.tabix.bed.gz.tbi | 338.24 KB | b918d21e3dafdd44ea39245f8fd030be |
| ENCFF365CRQ.tabix.bed.gz.tbi.dvc | 110.0 B | 796415d59d24777adabaa718b779a8e8 |
| genomic_resource.yaml | 2.65 KB | a1415b757797dda41a4b118a7650848f |
| genomic_resource_original.yaml | 2.53 KB | 5b3d91cd587b34ba3a61f5bf3d2a989d |
| statistics/ |