Resource

Id DNase-seq/ENCSR771JQHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR771JQH [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
Description
Labels
  • accession: ENCSR771JQH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000537/
  • biosample_summary: Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • date_created: 2020-03-30T19:01:27.893199+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR771JQH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR771JQH float

DNase-seq_ENCSR771JQH
DNase-seq ENCSR771JQH [biosample_summary="Homo sapiens activated T-cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 50 U/mL Interleukin-2 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR771JQH [0.0472, 41]
n
21,734,161
mean
2.25
sd
2.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 217341610.68% 98225
chr1 2144121 0.86% 9538
chr2 1669578 0.69% 7569
chr3 1114165 0.56% 5045
chr4 705387 0.37% 3152
chr5 1008261 0.56% 4602
chr6 1219680 0.71% 5472
chr7 1040921 0.65% 4711
chr8 859998 0.59% 3933
chr9 907076 0.66% 4146
chr10 1053758 0.79% 4774
chr11 1137795 0.84% 5188
chr12 1009870 0.76% 4538
chr13 396377 0.35% 1793
chr14 759347 0.71% 3460
chr15 798193 0.78% 3704
chr16 898212 0.99% 4044
chr17 1298180 1.56% 5752
chr18 424323 0.53% 1958
chr19 1194645 2.04% 5202
chr20 666504 1.03% 3097
chr21 299702 0.64% 1408
chr22 525257 1.03% 2409
chrX 602166 0.39% 2725
chrY 645 <0.01% 5
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98225 1 1440 221.27 200
global segment-length histogram

Files

Filename Size md5
ENCFF909SNY.bed.gz 1.03 MB 12a61a81da0b32af6f8b958e2ba65af7
ENCFF909SNY.tabix.bed.gz 981.64 KB 629adf227873fa91a76dcd180771690f
ENCFF909SNY.tabix.bed.gz.tbi 306.13 KB fe27ef31ac43a9084f161f55c33100ae
genomic_resource.yaml 1.72 KB f0006b10babde5431b292db19e6cd800
statistics/