DNase-seq_ENCSR771DAX
DNase-seq ENCSR771DAX [biosample_summary="Homo sapiens globus pallidus tissue male adult (78 years) and male adult (84 years)"]
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| Id: | DNase-seq/ENCSR771DAX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR771DAX [biosample_summary="Homo sapiens globus pallidus tissue male adult (78 years) and male adult (84 years)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: male adult (84 years) male adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF376RKB|/files/ENCFF376RKB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR771DAX | float |
DNase-seq_ENCSR771DAX |
DNase-seq ENCSR771DAX [biosample_summary="Homo sapiens globus pallidus tissue male adult (78 years) and male adult (84 years)"]
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[0.0672, 26.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF049FKM.bed.gz | 1.14 MB | dd3c0819cff58459b0688489a4b5ba00 |
| ENCFF049FKM.bed.gz.dvc | 101.0 B | be02b3b7026357ea7bd5a667e7f53a99 |
| ENCFF049FKM.tabix.bed.gz | 1.05 MB | 919a2ad809f9fdf2f4a74f5a28453c6e |
| ENCFF049FKM.tabix.bed.gz.dvc | 107.0 B | bc03e50a14906d99a4d45ebc6c71dad7 |
| ENCFF049FKM.tabix.bed.gz.tbi | 450.09 KB | 497fd1a6ca0393fd9efcb577a0096972 |
| ENCFF049FKM.tabix.bed.gz.tbi.dvc | 110.0 B | cba288e5a59292cbf5c1b4d524537b15 |
| genomic_resource.yaml | 2.17 KB | b58560e8a2d065dbbc7c1ea44b5d5a5b |
| genomic_resource_original.yaml | 2.04 KB | 1e02221bb40a5070a26c7ce25d27a39a |
| statistics/ |