Resource
| Id | DNase-seq/ENCSR771DAX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR771DAX [biosample_summary="Homo sapiens globus pallidus tissue male adult (78 years) and male adult (84 years)"] |
| Description |
status: released biological_replicates: Rep 2 summary: male adult (84 years) male adult (78 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF376RKB|/files/ENCFF376RKB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR771DAX | float |
DNase-seq_ENCSR771DAX |
DNase-seq ENCSR771DAX [biosample_summary="Homo sapiens globus pallidus tissue male adult (78 years) and male adult (84 years)"]
|
 |
[0.0672, 26.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 22911971 | 0.71% | 108529 |
| chr1 | 2150456 | 0.86% | 10096 |
| chr2 | 1806407 | 0.75% | 8519 |
| chr3 | 1518171 | 0.77% | 7095 |
| chr4 | 1114591 | 0.59% | 5299 |
| chr5 | 1317100 | 0.73% | 6191 |
| chr6 | 1398067 | 0.82% | 6524 |
| chr7 | 1144488 | 0.72% | 5500 |
| chr8 | 987332 | 0.68% | 4759 |
| chr9 | 1034313 | 0.75% | 4846 |
| chr10 | 1133893 | 0.85% | 5368 |
| chr11 | 1150435 | 0.85% | 5486 |
| chr12 | 1109920 | 0.83% | 5289 |
| chr13 | 637746 | 0.56% | 2985 |
| chr14 | 741887 | 0.69% | 3501 |
| chr15 | 717367 | 0.70% | 3426 |
| chr16 | 759547 | 0.84% | 3601 |
| chr17 | 969505 | 1.16% | 4617 |
| chr18 | 509052 | 0.63% | 2424 |
| chr19 | 791511 | 1.35% | 3708 |
| chr20 | 592264 | 0.92% | 2843 |
| chr21 | 289976 | 0.62% | 1364 |
| chr22 | 406048 | 0.80% | 1963 |
| chrX | 602213 | 0.39% | 2989 |
| chrY | 29682 | 0.05% | 136 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 108529 | 1 | 1120 | 211.11 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF049FKM.bed.gz | 1.14 MB | dd3c0819cff58459b0688489a4b5ba00 |
| ENCFF049FKM.tabix.bed.gz | 1.05 MB | 919a2ad809f9fdf2f4a74f5a28453c6e |
| ENCFF049FKM.tabix.bed.gz.tbi | 450.09 KB | 497fd1a6ca0393fd9efcb577a0096972 |
| genomic_resource.yaml | 2.17 KB | b58560e8a2d065dbbc7c1ea44b5d5a5b |
| statistics/ |