DNase-seq_ENCSR770JCP
DNase-seq ENCSR770JCP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (75 years)"]
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| Id: | DNase-seq/ENCSR770JCP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR770JCP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (75 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF852ZQP|/files/ENCFF852ZQP/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR770JCP | float |
DNase-seq_ENCSR770JCP |
DNase-seq ENCSR770JCP [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (75 years)"]
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[0.0803, 10.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF211HMH.bed.gz | 586.23 KB | 56decdedcd5205429239f3ebc07fe1ae |
| ENCFF211HMH.bed.gz.dvc | 100.0 B | ef69234a8ba18764a8c9f10b28eb73d3 |
| ENCFF211HMH.tabix.bed.gz | 531.13 KB | 2117f7b1b333b3ea83fc32f7f2183263 |
| ENCFF211HMH.tabix.bed.gz.dvc | 106.0 B | cc48fc9bfa110a42ec1720ca0063c123 |
| ENCFF211HMH.tabix.bed.gz.tbi | 255.25 KB | a45c6d3129533d900eb849c26ef3b522 |
| ENCFF211HMH.tabix.bed.gz.tbi.dvc | 110.0 B | 205dcae554848a5d261cb216f758ec1b |
| genomic_resource.yaml | 2.08 KB | b2b529e4e9158a23b39ae049af8babe4 |
| genomic_resource_original.yaml | 1.96 KB | 2e5e378dee3b836925dced60ffba2258 |
| statistics/ |