Resource

Id DNase-seq/ENCSR770DENcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR770DEN [biosample_summary="Homo sapiens fibroblast of skin of scalp male embryo (97 days)"]
Description
Labels
  • accession: ENCSR770DEN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_4006001/
  • biosample_summary: Homo sapiens fibroblast of skin of scalp male embryo (97 days)
  • date_created: 2015-09-16T21:42:13.304288+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR770DEN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (97 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR770DEN float

DNase-seq_ENCSR770DEN

DNase-seq ENCSR770DEN [biosample_summary="Homo sapiens fibroblast of skin of scalp male embryo (97 days)"]
HISTOGRAM FOR DNase-seq_ENCSR770DEN [0.0312, 55.9]
n
45,404,992
mean
2.12
sd
3.91

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 454049921.41% 241653
chr1 4016326 1.61% 21451
chr2 3827468 1.58% 20436
chr3 3182268 1.60% 16928
chr4 2541620 1.34% 13706
chr5 2837376 1.56% 15044
chr6 2863748 1.68% 15116
chr7 2329455 1.46% 12458
chr8 2118439 1.46% 11297
chr9 1955096 1.41% 10404
chr10 2208507 1.65% 11731
chr11 2234239 1.65% 11884
chr12 2190843 1.64% 11637
chr13 1298146 1.14% 6948
chr14 1374867 1.28% 7346
chr15 1527137 1.50% 8096
chr16 1250688 1.38% 6648
chr17 1676924 2.01% 8842
chr18 1081716 1.35% 5803
chr19 1126181 1.92% 5879
chr20 1120595 1.74% 5920
chr21 598960 1.28% 3155
chr22 686519 1.35% 3653
chrX 1300848 0.83% 6975
chrY 57026 0.10% 296
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 241653 1 860 187.89 180
global segment-length histogram

Files

Filename Size md5
ENCFF940PTR.bed.gz 2.61 MB 4c1fc4645f603face82f3b77ea7c6e50
ENCFF940PTR.tabix.bed.gz 2.38 MB c57edaa224f3bac5fd54bdc8fee6caa1
ENCFF940PTR.tabix.bed.gz.tbi 704.65 KB bdfdb630562d80ad4a9e709f894d54a6
genomic_resource.yaml 1.24 KB 23687b08a411b943eff2d3be5fcfa247
statistics/