| Id: | DNase-seq/ENCSR768AWY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR768AWY [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF544KYE|/files/ENCFF544KYE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 47426852 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR768AWY | float |
DNase-seq_ENCSR768AWY |
DNase-seq ENCSR768AWY [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 50 U/mL Interleukin-2 for 24 hours"]
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[0.254, 22.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF744LHU.bed.gz | 351.38 KB | 01c5714a14bb228178728b0bf4bd4d7a |
| ENCFF744LHU.bed.gz.dvc | 100.0 B | ec0e517de86dbe1fc0acf0e1a9600a23 |
| ENCFF744LHU.tabix.bed.gz | 323.92 KB | 2d0e9a0806f435e0d74a59d8c958818d |
| ENCFF744LHU.tabix.bed.gz.dvc | 106.0 B | 23c1a5167347bda4f843006fe6a79064 |
| ENCFF744LHU.tabix.bed.gz.tbi | 175.18 KB | 2d5e361ddec8a4ad972e0c5628acb413 |
| ENCFF744LHU.tabix.bed.gz.tbi.dvc | 110.0 B | 0813a6b44daed8ebe9d313716c7efb9a |
| genomic_resource.yaml | 2.4 KB | 8964ac42393e6c50d5e0e16691274895 |
| genomic_resource_original.yaml | 2.18 KB | bd67b54fa2bbbdee392eac21aaef4ee7 |
| statistics/ |