Resource

Id DNase-seq/ENCSR765ZMLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR765ZML [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"]
Description
Labels
  • accession: ENCSR765ZML
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours
  • date_created: 2020-04-19T18:36:59.210245+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR765ZML
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR765ZML float

DNase-seq_ENCSR765ZML
DNase-seq ENCSR765ZML [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR765ZML [0.089, 92.8]
n
11,134,133
mean
6.02
sd
9.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 111341330.35% 59412
chr1 1128986 0.45% 6020
chr2 777211 0.32% 4186
chr3 604117 0.30% 3222
chr4 373296 0.20% 1993
chr5 487673 0.27% 2646
chr6 666277 0.39% 3532
chr7 496419 0.31% 2646
chr8 428719 0.30% 2317
chr9 449166 0.32% 2391
chr10 505687 0.38% 2703
chr11 561087 0.42% 3011
chr12 579632 0.43% 3064
chr13 224326 0.20% 1209
chr14 388251 0.36% 2082
chr15 362397 0.36% 1975
chr16 459955 0.51% 2412
chr17 675684 0.81% 3579
chr18 170573 0.21% 931
chr19 713848 1.22% 3690
chr20 306387 0.48% 1650
chr21 138982 0.30% 751
chr22 273926 0.54% 1462
chrX 348240 0.22% 1872
chrY 13294 0.02% 68
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 59412 3 740 187.41 180
global segment-length histogram

Files

Filename Size md5
ENCFF608RIN.bed.gz 672.52 KB e0a08d38d92971b813e1eb57f3a87db8
ENCFF608RIN.tabix.bed.gz 612.42 KB 58d55f05df8ec51f5357f419e390d7fd
ENCFF608RIN.tabix.bed.gz.tbi 255.38 KB b121022cb9162462ea9138b5dcda6920
genomic_resource.yaml 1.82 KB 9f4f65809a814b7968f0549c067ab549
statistics/