DNase-seq_ENCSR763XBU
DNase-seq ENCSR763XBU [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (88 years)"]
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| Id: | DNase-seq/ENCSR763XBU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR763XBU [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (88 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (88 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF277BCT|/files/ENCFF277BCT/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR763XBU | float |
DNase-seq_ENCSR763XBU |
DNase-seq ENCSR763XBU [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (88 years)"]
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[0.123, 14] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF391XXF.bed.gz | 431.82 KB | ef7d9c9d35f12a73a792b2c14f97a776 |
| ENCFF391XXF.bed.gz.dvc | 100.0 B | bc500f4162a60a1cdcdb20cf0739a22e |
| ENCFF391XXF.tabix.bed.gz | 390.94 KB | 74ae30cdb3cab66193b326dbea611d71 |
| ENCFF391XXF.tabix.bed.gz.dvc | 106.0 B | 1b3089ae38a26f2bd8752d695f03e9fb |
| ENCFF391XXF.tabix.bed.gz.tbi | 187.49 KB | e84c8141fda028db5310186811780631 |
| ENCFF391XXF.tabix.bed.gz.tbi.dvc | 110.0 B | 9676f2e2fcba2c346fbe01d8683aac9a |
| genomic_resource.yaml | 2.23 KB | 12b27ae51dbc3fc4e261638c037773f4 |
| genomic_resource_original.yaml | 2.08 KB | a49974bf247f267207cea8a76e56c428 |
| statistics/ |