DNase-seq_ENCSR760QZM
DNase-seq ENCSR760QZM [biosample_summary="Homo sapiens transverse colon tissue female adult (51 years)"]
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| Id: | DNase-seq/ENCSR760QZM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR760QZM [biosample_summary="Homo sapiens transverse colon tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN915SCV|/analyses/ENCAN915SCV/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF867BHQ|/files/ENCFF867BHQ/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR760QZM | float |
DNase-seq_ENCSR760QZM |
DNase-seq ENCSR760QZM [biosample_summary="Homo sapiens transverse colon tissue female adult (51 years)"]
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[1, 7.54e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF159SOA.bed.gz | 1.71 MB | 0a13a110738025c492ea4ceadc4d8f54 |
| ENCFF159SOA.bed.gz.dvc | 101.0 B | 31965e17bd48a080408e2915c7d2166a |
| ENCFF159SOA.tabix.bed.gz | 1.48 MB | 9c14b7a9d59a7e87e49cd921339ba686 |
| ENCFF159SOA.tabix.bed.gz.dvc | 107.0 B | 6edc258b743042c8cabac65a10c63d4a |
| ENCFF159SOA.tabix.bed.gz.tbi | 387.18 KB | 9182dbe7cb594431e28017b978028682 |
| ENCFF159SOA.tabix.bed.gz.tbi.dvc | 110.0 B | c58c3dffda6b229636f9d9564170fd3c |
| genomic_resource.yaml | 2.21 KB | 5ae79cbcfb139d9d24405de5e52ad30a |
| genomic_resource_original.yaml | 2.11 KB | e924a21a8b5852edcac63fff92e251d0 |
| statistics/ |