DNase-seq_ENCSR759UNY
DNase-seq ENCSR759UNY [biosample_summary="Homo sapiens tongue tissue female embryo (59 days) and female embryo (76 days)"]
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| Id: | DNase-seq/ENCSR759UNY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR759UNY [biosample_summary="Homo sapiens tongue tissue female embryo (59 days) and female embryo (76 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (59 days) female embryo (76 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF388YEP|/files/ENCFF388YEP/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.37. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF177QSE|/files/ENCFF177QSE/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR759UNY | float |
DNase-seq_ENCSR759UNY |
DNase-seq ENCSR759UNY [biosample_summary="Homo sapiens tongue tissue female embryo (59 days) and female embryo (76 days)"]
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[0.0209, 18.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF804XTZ.bed.gz | 2.47 MB | e9f9984a73c39f6eb08da053d7434015 |
| ENCFF804XTZ.bed.gz.dvc | 101.0 B | d60017b4b13b82f9743dfde2c5d6943c |
| ENCFF804XTZ.tabix.bed.gz | 2.28 MB | 014cd668f571df6ceb49e9e684de4d4c |
| ENCFF804XTZ.tabix.bed.gz.dvc | 107.0 B | 5ace814ef4d5ac12edc79d1f4d6285a4 |
| ENCFF804XTZ.tabix.bed.gz.tbi | 700.29 KB | 4bd125e39b0ce21a2f60abefd7f8dcd9 |
| ENCFF804XTZ.tabix.bed.gz.tbi.dvc | 110.0 B | f0e17977042d28b1d07f983ddd43acc2 |
| genomic_resource.yaml | 2.98 KB | d828071b84d8a7763f6a7d291996f7c5 |
| genomic_resource_original.yaml | 2.86 KB | 0d2aadb8572b8b847bf7cc0ecff87890 |
| statistics/ |