Resource

Id DNase-seq/ENCSR757NJTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR757NJT [biosample_summary="Homo sapiens lower lobe of left lung tissue male adult (60 years)"]
Description
Labels
  • accession: ENCSR757NJT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008953/
  • biosample_summary: Homo sapiens lower lobe of left lung tissue male adult (60 years)
  • date_created: 2019-02-01T20:15:08.713135+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR757NJT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (60 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR757NJT float

DNase-seq_ENCSR757NJT
DNase-seq ENCSR757NJT [biosample_summary="Homo sapiens lower lobe of left lung tissue male adult (60 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR757NJT [0.0257, 35.4]
n
57,438,459
mean
0.846
sd
1.95

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 574384591.79% 270959
chr1 5258857 2.11% 24528
chr2 4637653 1.91% 21568
chr3 2709044 1.37% 13139
chr4 1849887 0.97% 8751
chr5 2384091 1.31% 11462
chr6 2175854 1.27% 10667
chr7 3199869 2.01% 14987
chr8 2435476 1.68% 11308
chr9 2639100 1.91% 12258
chr10 3312563 2.48% 15506
chr11 3451778 2.56% 15841
chr12 2476954 1.86% 11974
chr13 960497 0.84% 4630
chr14 1947875 1.82% 9230
chr15 2141247 2.10% 10307
chr16 2700445 2.99% 12920
chr17 3645724 4.38% 17157
chr18 882507 1.10% 4263
chr19 2260994 3.86% 10811
chr20 2127008 3.30% 9980
chr21 969657 2.08% 4507
chr22 2380649 4.68% 10722
chrX 865735 0.55% 4285
chrY 24995 0.04% 158
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 270959 1 1240 211.98 200
global segment-length histogram

Files

Filename Size md5
ENCFF190WKI.bed.gz 2.63 MB 070ed09388bc49ea045ae621e3257fab
ENCFF190WKI.tabix.bed.gz 2.48 MB a6c317692d6310fd0cfe31fc98ba7d82
ENCFF190WKI.tabix.bed.gz.tbi 376.12 KB ab5d421dd926037a24884ab3f5f025ce
genomic_resource.yaml 1.25 KB 98b40033cfa88f365ddfcd41928fb43e
statistics/