Resource

Id DNase-seq/ENCSR754LINcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR754LIN [biosample_summary="Homo sapiens H9 G1 phase stably expressing CDT1, stably expressing GMNN"]
Description
Labels
  • accession: ENCSR754LIN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003045/
  • biosample_summary: Homo sapiens H9 G1 phase stably expressing CDT1, stably expressing GMNN
  • date_created: 2016-03-30T17:23:15.812576+00:00
  • date_released: 2016-08-01
  • doi: 10.17989/ENCSR754LIN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: stably expressing C-terminal DsRed-tagged CDT1, stably expressing N-terminal eGFP-tagged GMNN G1 phase
  • status: released
  • submitter_comment: early G1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR754LIN float

DNase-seq_ENCSR754LIN
DNase-seq ENCSR754LIN [biosample_summary="Homo sapiens H9 G1 phase stably expressing CDT1, stably expressing GMNN"]
 HISTOGRAM FOR DNase-seq_ENCSR754LIN [1, 146]
n
30,625,500
mean
46.7
sd
25.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 306255000.95% 216562
chr1 2799460 1.12% 19863
chr2 2418410 1.00% 17053
chr3 1907010 0.96% 13542
chr4 1573390 0.83% 11180
chr5 1692490 0.93% 11931
chr6 1794140 1.05% 12743
chr7 1607840 1.01% 11479
chr8 1399860 0.96% 9849
chr9 1262430 0.91% 8950
chr10 1449240 1.08% 10191
chr11 1581550 1.17% 11184
chr12 1481980 1.11% 10464
chr13 840040 0.73% 5921
chr14 959550 0.90% 6737
chr15 983210 0.96% 6966
chr16 1058620 1.17% 7473
chr17 1318120 1.58% 9374
chr18 585830 0.73% 4109
chr19 1163600 1.99% 8171
chr20 804570 1.25% 5588
chr21 328080 0.70% 2303
chr22 563620 1.11% 3958
chrX 1046610 0.67% 7486
chrY 5850 0.01% 47
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 216562 10 370 141.42 150
global segment-length histogram

Files

Filename Size md5
ENCFF305HXS.bed.gz 1.83 MB 52ec30a09b668cb055c4ee93328f9d8f
ENCFF305HXS.tabix.bed.gz 1.68 MB d15f4fdda6e8f5dd9d7235abced769f6
ENCFF305HXS.tabix.bed.gz.tbi 662.41 KB 482f84a8a61d4b0dc8804c94e4b49b61
genomic_resource.yaml 1.44 KB 8b1f104c19f1e68bbf631d0f52fcbc86
statistics/