DNase-seq_ENCSR753QKD
DNase-seq ENCSR753QKD [biosample_summary="Homo sapiens muscle of arm tissue female embryo (98 days)"]
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| Id: | DNase-seq/ENCSR753QKD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR753QKD [biosample_summary="Homo sapiens muscle of arm tissue female embryo (98 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (98 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN010IRF|/analyses/ENCAN010IRF/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF197JIS|/files/ENCFF197JIS/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 30082983 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF240PRN|/files/ENCFF240PRN/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 29883489 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR753QKD | float |
DNase-seq_ENCSR753QKD |
DNase-seq ENCSR753QKD [biosample_summary="Homo sapiens muscle of arm tissue female embryo (98 days)"]
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[3, 1.04e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF886DDL.bed.gz | 936.47 KB | a9e24643f21e8345bfd753a835f16644 |
| ENCFF886DDL.bed.gz.dvc | 100.0 B | c2fc50020cc0eebfa3b4bb44cdf7485d |
| ENCFF886DDL.tabix.bed.gz | 803.5 KB | 07d0deb52dc7773a6959355e6af78fcc |
| ENCFF886DDL.tabix.bed.gz.dvc | 106.0 B | 73cc652c4b1ba19c072adcff937738cd |
| ENCFF886DDL.tabix.bed.gz.tbi | 475.83 KB | 111efc93edae59468a42058f014c14bc |
| ENCFF886DDL.tabix.bed.gz.tbi.dvc | 110.0 B | ebe863348c0dc2ec0ac3ea46c5756e14 |
| genomic_resource.yaml | 2.6 KB | 1111c2d5d2952db0cd15171c45464c53 |
| genomic_resource_original.yaml | 2.5 KB | 4eed8a4c0f49e228ee13b6527b15511e |
| statistics/ |