DNase-seq_ENCSR751VMX
DNase-seq ENCSR751VMX [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR751VMX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR751VMX [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF211LAD|/files/ENCFF211LAD/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR751VMX | float |
DNase-seq_ENCSR751VMX |
DNase-seq ENCSR751VMX [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0396, 9.06] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF026BCO.bed.gz | 1.52 MB | 524be5fe0ddf43d662b9e4ed58685b4c |
| ENCFF026BCO.bed.gz.dvc | 101.0 B | baaf77703bc723879658cb5dd12d144e |
| ENCFF026BCO.tabix.bed.gz | 1.45 MB | b620188932b88c8f715d4b69f63b1c16 |
| ENCFF026BCO.tabix.bed.gz.dvc | 107.0 B | 15807eacba28fb911b079341777d1997 |
| ENCFF026BCO.tabix.bed.gz.tbi | 201.92 KB | 992ee82ce16fe3c03a9524acef579dfc |
| ENCFF026BCO.tabix.bed.gz.tbi.dvc | 110.0 B | 773e5eed55086873ee291e3ef06441c7 |
| genomic_resource.yaml | 2.3 KB | 5f13a55deef9a7c1455ad78b477e9301 |
| genomic_resource_original.yaml | 2.14 KB | 5648d1e0a59abc7df66835f900ac005d |
| statistics/ |