| Id: | DNase-seq/ENCSR749YCR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR749YCR [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF024UTK|/files/ENCFF024UTK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 26405336 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR749YCR | float |
DNase-seq_ENCSR749YCR |
DNase-seq ENCSR749YCR [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-7 for 1 hour"]
|
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[0.38, 46.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF799MOA.bed.gz | 363.97 KB | 7363ecf268d1539f65cab2244374e0aa |
| ENCFF799MOA.bed.gz.dvc | 100.0 B | ccc81977e31b1b1fc976d980f2caf692 |
| ENCFF799MOA.tabix.bed.gz | 329.56 KB | e011e0226324995c633be523c17ef222 |
| ENCFF799MOA.tabix.bed.gz.dvc | 106.0 B | 68475d21f17419add282ce9042016bba |
| ENCFF799MOA.tabix.bed.gz.tbi | 184.46 KB | 1e3c2768e789c7f8834d9bcae1a6833f |
| ENCFF799MOA.tabix.bed.gz.tbi.dvc | 110.0 B | aec37104046f3bec3f1ce6a8f5470865 |
| genomic_resource.yaml | 2.44 KB | a61be9482f63666c2492fed089f3a822 |
| genomic_resource_original.yaml | 2.21 KB | 080abd243028d641cf5547548142a617 |
| statistics/ |