DNase-seq_ENCSR749WVO
DNase-seq ENCSR749WVO [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)"]
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| Id: | DNase-seq/ENCSR749WVO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR749WVO [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (89 years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF852OWB|/files/ENCFF852OWB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR749WVO | float |
DNase-seq_ENCSR749WVO |
DNase-seq ENCSR749WVO [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (89 years)"]
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[0.0719, 26.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF945ZQU.bed.gz | 727.5 KB | b35a4516669689c3bb6355114c35325d |
| ENCFF945ZQU.bed.gz.dvc | 100.0 B | 008b37ee82db588c4f769b1ce49a1192 |
| ENCFF945ZQU.tabix.bed.gz | 664.24 KB | ba85d146c660a47da3f0c96d38ab54c9 |
| ENCFF945ZQU.tabix.bed.gz.dvc | 106.0 B | aed6b6628b9f4ceebb07fe7aaf0f8c94 |
| ENCFF945ZQU.tabix.bed.gz.tbi | 255.91 KB | 4aabc99637974844dfe01d6f720fcb3c |
| ENCFF945ZQU.tabix.bed.gz.tbi.dvc | 110.0 B | a0efd636b2196f9b694d63a96c74a817 |
| genomic_resource.yaml | 2.25 KB | 5c4120c3ab013bca00a16ab897272f1c |
| genomic_resource_original.yaml | 2.1 KB | 22ce13a1bf243700640d99e6ac868bed |
| statistics/ |