Resource

Id DNase-seq/ENCSR749MUHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR749MUH [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR749MUH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002046/
  • biosample_summary: Homo sapiens thyroid gland tissue male adult (37 years)
  • date_created: 2019-08-18T16:56:38.732460+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR749MUH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR749MUH float

DNase-seq_ENCSR749MUH
DNase-seq ENCSR749MUH [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR749MUH [5, 9.48e+03]
n
18,015,027
mean
142
sd
185

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 180150270.56% 119965
chr1 1746710 0.70% 11632
chr2 1382106 0.57% 9204
chr3 1133393 0.57% 7546
chr4 772679 0.41% 5150
chr5 926473 0.51% 6169
chr6 999617 0.59% 6660
chr7 860099 0.54% 5726
chr8 776287 0.53% 5167
chr9 812826 0.59% 5411
chr10 886284 0.66% 5901
chr11 962016 0.71% 6409
chr12 838900 0.63% 5586
chr13 407026 0.36% 2708
chr14 604611 0.56% 4025
chr15 636588 0.62% 4240
chr16 668378 0.74% 4453
chr17 881217 1.06% 5869
chr18 382487 0.48% 2546
chr19 682649 1.16% 4548
chr20 531512 0.82% 3536
chr21 200757 0.43% 1335
chr22 410089 0.81% 2731
chrX 486262 0.31% 3239
chrY 26061 0.05% 174
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 119965 18 450 150.17 150
global segment-length histogram

Files

Filename Size md5
ENCFF301WMS.bed.gz 1.15 MB 9bb703c969c7bd08fded99ce720db9dc
ENCFF301WMS.tabix.bed.gz 1019.52 KB 17efd77c9175d00fffacfd806b9d0817
ENCFF301WMS.tabix.bed.gz.tbi 467.27 KB e5add13fb5cf5a4724f8028fcb13b5b4
genomic_resource.yaml 1.39 KB d7465fb2c6d5912de876d6589353793b
statistics/