Resource
| Id | DNase-seq/ENCSR749BWV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR749BWV [biosample_summary="Homo sapiens heart tissue female embryo (116 days) and female embryo (98 days)"] |
| Description |
status: released biological_replicates: Rep 2 summary: female embryo (116 days) female embryo (98 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN971EHN|/analyses/ENCAN971EHN/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF088HYN|/files/ENCFF088HYN/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR749BWV | float |
DNase-seq_ENCSR749BWV |
DNase-seq ENCSR749BWV [biosample_summary="Homo sapiens heart tissue female embryo (116 days) and female embryo (98 days)"]
|
 |
[6, 5.91e+03] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 23449970 | 0.73% | 156080 |
| chr1 | 2176358 | 0.87% | 14484 |
| chr2 | 1899160 | 0.78% | 12639 |
| chr3 | 1580305 | 0.80% | 10522 |
| chr4 | 1272223 | 0.67% | 8468 |
| chr5 | 1365777 | 0.75% | 9089 |
| chr6 | 1438025 | 0.84% | 9568 |
| chr7 | 1199467 | 0.75% | 7985 |
| chr8 | 1119528 | 0.77% | 7446 |
| chr9 | 969196 | 0.70% | 6442 |
| chr10 | 1167869 | 0.87% | 7772 |
| chr11 | 1177403 | 0.87% | 7843 |
| chr12 | 1141662 | 0.86% | 7595 |
| chr13 | 685042 | 0.60% | 4558 |
| chr14 | 706337 | 0.66% | 4699 |
| chr15 | 757985 | 0.74% | 5046 |
| chr16 | 687905 | 0.76% | 4582 |
| chr17 | 919582 | 1.10% | 6126 |
| chr18 | 564000 | 0.70% | 3755 |
| chr19 | 723675 | 1.23% | 4821 |
| chr20 | 567825 | 0.88% | 3778 |
| chr21 | 270326 | 0.58% | 1799 |
| chr22 | 406315 | 0.80% | 2706 |
| chrX | 652205 | 0.42% | 4345 |
| chrY | 1800 | <0.01% | 12 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 156080 | 13 | 352 | 150.24 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF709LRW.bed.gz | 1.48 MB | d945bad3ba9a7afdaca854307b3a2b17 |
| ENCFF709LRW.tabix.bed.gz | 1.28 MB | 421db430f66499151505687282b46311 |
| ENCFF709LRW.tabix.bed.gz.tbi | 567.0 KB | 11f0001e05d391fbc4a169f7bca658b7 |
| genomic_resource.yaml | 2.32 KB | 57fca034b13b3271f5c0abc37d0a10d7 |
| statistics/ |