DNase-seq_ENCSR749BWV
DNase-seq ENCSR749BWV [biosample_summary="Homo sapiens heart tissue female embryo (116 days) and female embryo (98 days)"]
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| Id: | DNase-seq/ENCSR749BWV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR749BWV [biosample_summary="Homo sapiens heart tissue female embryo (116 days) and female embryo (98 days)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female embryo (116 days) female embryo (98 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN971EHN|/analyses/ENCAN971EHN/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF088HYN|/files/ENCFF088HYN/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR749BWV | float |
DNase-seq_ENCSR749BWV |
DNase-seq ENCSR749BWV [biosample_summary="Homo sapiens heart tissue female embryo (116 days) and female embryo (98 days)"]
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[6, 5.91e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF709LRW.bed.gz | 1.48 MB | d945bad3ba9a7afdaca854307b3a2b17 |
| ENCFF709LRW.bed.gz.dvc | 101.0 B | 66f3fd44aa233b74754ca01e7d741d05 |
| ENCFF709LRW.tabix.bed.gz | 1.28 MB | 421db430f66499151505687282b46311 |
| ENCFF709LRW.tabix.bed.gz.dvc | 107.0 B | 65bc449c20aa884b8d7cfd69b7c51eb0 |
| ENCFF709LRW.tabix.bed.gz.tbi | 567.0 KB | 11f0001e05d391fbc4a169f7bca658b7 |
| ENCFF709LRW.tabix.bed.gz.tbi.dvc | 110.0 B | ad31dbecf418b208c4afcc621d98adfe |
| genomic_resource.yaml | 2.32 KB | 57fca034b13b3271f5c0abc37d0a10d7 |
| genomic_resource_original.yaml | 2.2 KB | 2c0f89cfb5454db447abed6f5c286cb4 |
| statistics/ |