Resource

Id DNase-seq/ENCSR747RGRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR747RGR [biosample_summary="Homo sapiens T-helper 17 cell male adult (24 years)"]
Description
Labels
  • accession: ENCSR747RGR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000899/
  • biosample_summary: Homo sapiens T-helper 17 cell male adult (24 years)
  • date_created: 2020-05-11T15:54:58.185575+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR747RGR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (24 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR747RGR float

DNase-seq_ENCSR747RGR

DNase-seq ENCSR747RGR [biosample_summary="Homo sapiens T-helper 17 cell male adult (24 years)"]
HISTOGRAM FOR DNase-seq_ENCSR747RGR [0.127, 46.2]
n
7,575,474
mean
6.2
sd
6.97

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75754740.24% 39520
chr1 778520 0.31% 4044
chr2 515207 0.21% 2713
chr3 387405 0.20% 2017
chr4 253730 0.13% 1318
chr5 331514 0.18% 1709
chr6 398690 0.23% 2070
chr7 341695 0.21% 1810
chr8 323360 0.22% 1707
chr9 316767 0.23% 1677
chr10 317033 0.24% 1657
chr11 447526 0.33% 2331
chr12 378493 0.28% 1963
chr13 134104 0.12% 683
chr14 290672 0.27% 1507
chr15 223462 0.22% 1163
chr16 297812 0.33% 1548
chr17 461404 0.55% 2397
chr18 101786 0.13% 522
chr19 532070 0.91% 2735
chr20 221306 0.34% 1188
chr21 102583 0.22% 546
chr22 209072 0.41% 1112
chrX 205509 0.13% 1075
chrY 5754 0.01% 28
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39520 2 777 191.69 180
global segment-length histogram

Files

Filename Size md5
ENCFF411JWW.bed.gz 445.9 KB d326f75774cbf88d4981aa7551b737d0
ENCFF411JWW.tabix.bed.gz 406.42 KB 0889f0f113b93bc4acfab0c083047c98
ENCFF411JWW.tabix.bed.gz.tbi 176.8 KB 8ec29e4d4f121ebce26338d58cdc807c
genomic_resource.yaml 1.21 KB ca39dd66a7a524edb1fee03bfa5eee93
statistics/