DNase-seq_ENCSR746ZPP
DNase-seq ENCSR746ZPP [biosample_summary="Homo sapiens L1-S8R"]
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| Id: | DNase-seq/ENCSR746ZPP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR746ZPP [biosample_summary="Homo sapiens L1-S8R"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF526RIQ|/files/ENCFF526RIQ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF414ZYF|/files/ENCFF414ZYF/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR746ZPP | float |
DNase-seq_ENCSR746ZPP |
DNase-seq ENCSR746ZPP [biosample_summary="Homo sapiens L1-S8R"]
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[0.0229, 12.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF783XJK.bed.gz | 1.69 MB | 3eb205ceb23b58a8e08dfc9dd868153d |
| ENCFF783XJK.bed.gz.dvc | 101.0 B | 3858edb51e06eae7f9a84e7632cc337e |
| ENCFF783XJK.tabix.bed.gz | 1.55 MB | 6c84d2f3638ffb28a7526ff6a3cf059a |
| ENCFF783XJK.tabix.bed.gz.dvc | 107.0 B | 7f5584640c62f8ede4fc3abeda803bf8 |
| ENCFF783XJK.tabix.bed.gz.tbi | 598.6 KB | 7436546867696eabd7e43c7117707f4a |
| ENCFF783XJK.tabix.bed.gz.tbi.dvc | 110.0 B | 15c7e8f5b3d8a39305676395e3eea43b |
| genomic_resource.yaml | 2.77 KB | 49f2e985ffd30208c0d4e648f39a7d71 |
| genomic_resource_original.yaml | 2.7 KB | bbb1f242eb652d72d13ed457ad6fd551 |
| statistics/ |