DNase-seq_ENCSR746RDJ
DNase-seq ENCSR746RDJ [biosample_summary="Homo sapiens heart right ventricle tissue female embryo (101 days) and female embryo (103 days)"]
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| Id: | DNase-seq/ENCSR746RDJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR746RDJ [biosample_summary="Homo sapiens heart right ventricle tissue female embryo (101 days) and female embryo (103 days)"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female embryo (101 days) female embryo (103 days) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF909FOD|/files/ENCFF909FOD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.26. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF061BRY|/files/ENCFF061BRY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR746RDJ | float |
DNase-seq_ENCSR746RDJ |
DNase-seq ENCSR746RDJ [biosample_summary="Homo sapiens heart right ventricle tissue female embryo (101 days) and female embryo (103 days)"]
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[0.0413, 20.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF475WPV.bed.gz | 1.43 MB | 81d93ccd2f9a791674e1eb5439cccc9e |
| ENCFF475WPV.bed.gz.dvc | 101.0 B | 22f501ab40b6cf21bbd2a25c2c85702f |
| ENCFF475WPV.tabix.bed.gz | 1.31 MB | db00d0003526d5c8e7caf925e2e9bd72 |
| ENCFF475WPV.tabix.bed.gz.dvc | 107.0 B | 2ee39648d6a972b2f1844180ea40bca1 |
| ENCFF475WPV.tabix.bed.gz.tbi | 505.38 KB | f98006b42f50f3c57002ba317bcf3958 |
| ENCFF475WPV.tabix.bed.gz.tbi.dvc | 110.0 B | 9ffeeed59c46b04291392ebf06e7980b |
| genomic_resource.yaml | 3.04 KB | 2ca51a608edaedbfd83b9e7d81027af8 |
| genomic_resource_original.yaml | 2.9 KB | 577c31fab7a3fbad4cb6edd15e7ff48c |
| statistics/ |