Resource

Id DNase-seq/ENCSR740DJQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR740DJQ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
Description
Labels
  • accession: ENCSR740DJQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour
  • date_created: 2020-04-20T23:45:46.747379+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR740DJQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR740DJQ float

DNase-seq_ENCSR740DJQ
DNase-seq ENCSR740DJQ [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 50 U/mL Interleukin-2 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR740DJQ [0.121, 82.6]
n
10,449,552
mean
7.14
sd
9.47

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 104495520.32% 56279
chr1 1050610 0.42% 5654
chr2 718964 0.30% 3874
chr3 558725 0.28% 3017
chr4 354061 0.19% 1919
chr5 468281 0.26% 2503
chr6 597828 0.35% 3212
chr7 470890 0.30% 2551
chr8 385796 0.27% 2127
chr9 422931 0.31% 2267
chr10 478805 0.36% 2584
chr11 525508 0.39% 2875
chr12 535048 0.40% 2864
chr13 202491 0.18% 1099
chr14 365181 0.34% 1954
chr15 336055 0.33% 1835
chr16 431540 0.48% 2315
chr17 652914 0.78% 3495
chr18 167758 0.21% 916
chr19 700448 1.19% 3658
chr20 297655 0.46% 1619
chr21 125086 0.27% 675
chr22 260084 0.51% 1417
chrX 333395 0.21% 1795
chrY 9498 0.02% 54
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56279 6 780 185.67 180
global segment-length histogram

Files

Filename Size md5
ENCFF413CCK.bed.gz 635.26 KB 63e023f92dd6db6475c7233119cd7e6f
ENCFF413CCK.tabix.bed.gz 579.3 KB 507f497f8fe97d62782dbcbc01593703
ENCFF413CCK.tabix.bed.gz.tbi 246.94 KB 518efeab5b82355dde709341e397600a
genomic_resource.yaml 1.76 KB e3afc69acdeed8259b058598ba24e196
statistics/