DNase-seq_ENCSR739VKY
DNase-seq ENCSR739VKY [biosample_summary="Homo sapiens naive B cell female adult (39 years)"]
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| Id: | DNase-seq/ENCSR739VKY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR739VKY [biosample_summary="Homo sapiens naive B cell female adult (39 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (39 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF840FIU|/files/ENCFF840FIU/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR739VKY | float |
DNase-seq_ENCSR739VKY |
DNase-seq ENCSR739VKY [biosample_summary="Homo sapiens naive B cell female adult (39 years)"]
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[0.0945, 28.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF642YJJ.bed.gz | 656.7 KB | 48721f3d9ae5257ffe4acc4cdb600cad |
| ENCFF642YJJ.bed.gz.dvc | 100.0 B | edc5a2f7c8bf1d8ce3e55977d171da3c |
| ENCFF642YJJ.tabix.bed.gz | 601.68 KB | 3d618dbd1de9cfd6350ec628f892b4f3 |
| ENCFF642YJJ.tabix.bed.gz.dvc | 106.0 B | 6ef9f8f75879b65ee4ac9c814fc6ccbb |
| ENCFF642YJJ.tabix.bed.gz.tbi | 266.19 KB | 11de95ebd55dc68bc0fcd048b1ce355e |
| ENCFF642YJJ.tabix.bed.gz.tbi.dvc | 110.0 B | 9341148bfac75c3a0435fd8528827e38 |
| genomic_resource.yaml | 2.02 KB | ff63d45de9800627af13da780ad528e0 |
| genomic_resource_original.yaml | 1.92 KB | 9eb67d9ae06f61bc181b6bc2a85c9edd |
| statistics/ |