Resource
| Id | DNase-seq/ENCSR736VVP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR736VVP [biosample_summary="Homo sapiens memory B cell female adult (39 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (39 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF784VSB|/files/ENCFF784VSB/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR736VVP | float |
DNase-seq_ENCSR736VVP |
DNase-seq ENCSR736VVP [biosample_summary="Homo sapiens memory B cell female adult (39 years)"]
|
 |
[0.0469, 14.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13486246 | 0.42% | 55763 |
| chr1 | 1315883 | 0.53% | 5389 |
| chr2 | 989123 | 0.41% | 4164 |
| chr3 | 700490 | 0.35% | 2934 |
| chr4 | 456946 | 0.24% | 1858 |
| chr5 | 621143 | 0.34% | 2516 |
| chr6 | 775986 | 0.45% | 3140 |
| chr7 | 650455 | 0.41% | 2748 |
| chr8 | 528994 | 0.36% | 2224 |
| chr9 | 575596 | 0.42% | 2412 |
| chr10 | 558283 | 0.42% | 2361 |
| chr11 | 721784 | 0.53% | 3037 |
| chr12 | 691590 | 0.52% | 2788 |
| chr13 | 230122 | 0.20% | 937 |
| chr14 | 451241 | 0.42% | 1844 |
| chr15 | 468600 | 0.46% | 1976 |
| chr16 | 550531 | 0.61% | 2247 |
| chr17 | 827072 | 0.99% | 3410 |
| chr18 | 210936 | 0.26% | 902 |
| chr19 | 879548 | 1.50% | 3484 |
| chr20 | 369412 | 0.57% | 1558 |
| chr21 | 164294 | 0.35% | 689 |
| chr22 | 375984 | 0.74% | 1591 |
| chrX | 372153 | 0.24% | 1553 |
| chrY | 80 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 55763 | 1 | 1120 | 241.85 | 204 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF448LQD.bed.gz | 591.88 KB | 708025048c35c589175158073de7aaf3 |
| ENCFF448LQD.tabix.bed.gz | 561.4 KB | d4f5505128fd1e9235a46143247aecf8 |
| ENCFF448LQD.tabix.bed.gz.tbi | 226.65 KB | 89024f11aef8ba2428e1a78fe661fd5f |
| genomic_resource.yaml | 2.02 KB | 7f27db71a423b29f721b10ca1b818e65 |
| statistics/ |