DNase-seq_ENCSR736VVP
DNase-seq ENCSR736VVP [biosample_summary="Homo sapiens memory B cell female adult (39 years)"]
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| Id: | DNase-seq/ENCSR736VVP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR736VVP [biosample_summary="Homo sapiens memory B cell female adult (39 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (39 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF784VSB|/files/ENCFF784VSB/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR736VVP | float |
DNase-seq_ENCSR736VVP |
DNase-seq ENCSR736VVP [biosample_summary="Homo sapiens memory B cell female adult (39 years)"]
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[0.0469, 14.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF448LQD.bed.gz | 591.88 KB | 708025048c35c589175158073de7aaf3 |
| ENCFF448LQD.bed.gz.dvc | 100.0 B | 9668fc8d0a91b7d6ba69571bcae3ef68 |
| ENCFF448LQD.tabix.bed.gz | 561.4 KB | d4f5505128fd1e9235a46143247aecf8 |
| ENCFF448LQD.tabix.bed.gz.dvc | 106.0 B | cc56e1ca9ac8b292a828dbd6c1945874 |
| ENCFF448LQD.tabix.bed.gz.tbi | 226.65 KB | 89024f11aef8ba2428e1a78fe661fd5f |
| ENCFF448LQD.tabix.bed.gz.tbi.dvc | 110.0 B | 004e1c076fd368424cd9a6606b9e852a |
| genomic_resource.yaml | 2.02 KB | 7f27db71a423b29f721b10ca1b818e65 |
| genomic_resource_original.yaml | 1.92 KB | 5c7380dcb6f11d680f0f1527f2b346f4 |
| statistics/ |