DNase-seq_ENCSR735NTV
DNase-seq ENCSR735NTV [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)"]
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| Id: | DNase-seq/ENCSR735NTV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR735NTV [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF558NDU|/files/ENCFF558NDU/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR735NTV | float |
DNase-seq_ENCSR735NTV |
DNase-seq ENCSR735NTV [biosample_summary="Homo sapiens heart left ventricle tissue male adult (54 years)"]
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[0.0395, 16.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF458QDV.bed.gz | 1.46 MB | 264e3f23050050af1544733e45bd8f94 |
| ENCFF458QDV.bed.gz.dvc | 101.0 B | 59d75a535d73d190a99a6d20db0aadd5 |
| ENCFF458QDV.tabix.bed.gz | 1.35 MB | 997aee126bd2a44e9d3529086c78b57e |
| ENCFF458QDV.tabix.bed.gz.dvc | 107.0 B | d2b0797171c110827aacc229552234fd |
| ENCFF458QDV.tabix.bed.gz.tbi | 373.35 KB | 3bfeff628734fe534129cc8493620fed |
| ENCFF458QDV.tabix.bed.gz.tbi.dvc | 110.0 B | 1cac7431acde1749ee8edb8fb366ce66 |
| genomic_resource.yaml | 2.06 KB | 43c69089e157ad53fe17c22d62e1065c |
| genomic_resource_original.yaml | 1.95 KB | 78a14b4310a8d048c3209e9024d29bd0 |
| statistics/ |