| Id: | DNase-seq/ENCSR735MJZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR735MJZ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours output_type: peaks audit_warning: Alignment file {ENCFF431EGV|/files/ENCFF431EGV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 24748716 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR735MJZ | float |
DNase-seq_ENCSR735MJZ |
DNase-seq ENCSR735MJZ [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-4 for 4 hours"]
|
 |
[0.486, 74.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF082SFU.bed.gz | 384.31 KB | cc22ec53cb681519c4230095b2ebe7ec |
| ENCFF082SFU.bed.gz.dvc | 100.0 B | 0b35ae3271c7fdc059171dcbe67b7952 |
| ENCFF082SFU.tabix.bed.gz | 345.68 KB | 95c328261f226d19da02c8e09e2e9287 |
| ENCFF082SFU.tabix.bed.gz.dvc | 106.0 B | 6dee1d17287063dda73b22ab4bd8023e |
| ENCFF082SFU.tabix.bed.gz.tbi | 184.49 KB | ac66c1c042b02592954b21d3b9de4a9d |
| ENCFF082SFU.tabix.bed.gz.tbi.dvc | 110.0 B | 438624b245d202e3a75ff792b1a3d688 |
| genomic_resource.yaml | 2.46 KB | 6bfb8ee25bc7d4f2b6d5ce93f2e2c71d |
| genomic_resource_original.yaml | 2.23 KB | 517d8abecc724847188a240a418d6382 |
| statistics/ |