Resource

Id DNase-seq/ENCSR734VFUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR734VFU [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour"]
Description
Labels
  • accession: ENCSR734VFU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour
  • date_created: 2020-04-20T23:45:55.686749+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR734VFU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR734VFU float

DNase-seq_ENCSR734VFU
DNase-seq ENCSR734VFU [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR734VFU [0.495, 59.5]
n
4,744,989
mean
7.17
sd
6.58

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 47449890.15% 26386
chr1 497455 0.20% 2767
chr2 323152 0.13% 1788
chr3 249870 0.13% 1390
chr4 151999 0.08% 844
chr5 205083 0.11% 1154
chr6 256207 0.15% 1427
chr7 217701 0.14% 1212
chr8 167448 0.12% 949
chr9 188315 0.14% 1055
chr10 193525 0.14% 1098
chr11 255966 0.19% 1436
chr12 243058 0.18% 1337
chr13 91360 0.08% 494
chr14 161618 0.15% 901
chr15 154003 0.15% 879
chr16 206029 0.23% 1145
chr17 308658 0.37% 1732
chr18 64096 0.08% 361
chr19 369146 0.63% 1964
chr20 133562 0.21% 754
chr21 55678 0.12% 309
chr22 123020 0.24% 694
chrX 123610 0.08% 674
chrY 4430 0.01% 22
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26386 12 740 179.83 180
global segment-length histogram

Files

Filename Size md5
ENCFF662PHL.bed.gz 287.8 KB 852d2b40635cf9d50fae39119819d16e
ENCFF662PHL.tabix.bed.gz 260.14 KB 6355d2833440083a5af460eab2ee789e
ENCFF662PHL.tabix.bed.gz.tbi 159.33 KB f8a6283a7ffe2de61e55a0a3acb73151
genomic_resource.yaml 2.62 KB 2b97ea4ed53e2b7d274d68bd134f9c7b
statistics/