| Id: | DNase-seq/ENCSR734VFU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR734VFU [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF951XPO|/files/ENCFF951XPO/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 22269868 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR734VFU | float |
DNase-seq_ENCSR734VFU |
DNase-seq ENCSR734VFU [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-23 for 1 hour, 100 ng/mL Interleukin-1b for 1 hour"]
|
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[0.495, 59.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF662PHL.bed.gz | 287.8 KB | 852d2b40635cf9d50fae39119819d16e |
| ENCFF662PHL.bed.gz.dvc | 100.0 B | f3befbce67ffbc7e26e62ab9f10aee9e |
| ENCFF662PHL.tabix.bed.gz | 260.14 KB | 6355d2833440083a5af460eab2ee789e |
| ENCFF662PHL.tabix.bed.gz.dvc | 106.0 B | 0845899dc47a6b434fd5831d57e2dee6 |
| ENCFF662PHL.tabix.bed.gz.tbi | 159.33 KB | f8a6283a7ffe2de61e55a0a3acb73151 |
| ENCFF662PHL.tabix.bed.gz.tbi.dvc | 110.0 B | 2a159b42996590de397a65be3d17444d |
| genomic_resource.yaml | 2.62 KB | 2b97ea4ed53e2b7d274d68bd134f9c7b |
| genomic_resource_original.yaml | 2.37 KB | ce04cf443828f21c29534671368ff3ec |
| statistics/ |