DNase-seq_ENCSR733YNW
DNase-seq ENCSR733YNW [biosample_summary="Homo sapiens vagina tissue female adult (51 years)"]
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| Id: | DNase-seq/ENCSR733YNW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR733YNW [biosample_summary="Homo sapiens vagina tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF162FHA|/files/ENCFF162FHA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.24. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN214YBM|/analyses/ENCAN214YBM/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR733YNW | float |
DNase-seq_ENCSR733YNW |
DNase-seq ENCSR733YNW [biosample_summary="Homo sapiens vagina tissue female adult (51 years)"]
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[2, 4.62e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF329QLI.bed.gz | 1.01 MB | 86efb4da16cae739b770f89623d9f88a |
| ENCFF329QLI.bed.gz.dvc | 101.0 B | d5c28be411978ebdc8e9df6c102611cc |
| ENCFF329QLI.tabix.bed.gz | 894.66 KB | f4a27b67660a1ea92d73386d973ac837 |
| ENCFF329QLI.tabix.bed.gz.dvc | 106.0 B | 0f64eff27c6eda80e2594efca838bbc2 |
| ENCFF329QLI.tabix.bed.gz.tbi | 179.06 KB | 167e675a4a7838e12b072467e0b9ab74 |
| ENCFF329QLI.tabix.bed.gz.tbi.dvc | 110.0 B | 5e3ddaf93a7ae68d55ed4ef564c1cca8 |
| genomic_resource.yaml | 2.18 KB | 7b8ca19ddf632da69269f675bf0d4421 |
| genomic_resource_original.yaml | 2.09 KB | ce36e86badff1baad3e1c880f3b74ba4 |
| statistics/ |