DNase-seq_ENCSR732RIC
DNase-seq ENCSR732RIC [biosample_summary="Homo sapiens ovary tissue female adult (47 years)"]
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| Id: | DNase-seq/ENCSR732RIC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR732RIC [biosample_summary="Homo sapiens ovary tissue female adult (47 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF868TSB|/files/ENCFF868TSB/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR732RIC | float |
DNase-seq_ENCSR732RIC |
DNase-seq ENCSR732RIC [biosample_summary="Homo sapiens ovary tissue female adult (47 years)"]
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[0.0405, 13.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF608SOD.bed.gz | 843.96 KB | 53e3613d3951e6b39f55518214bef7b3 |
| ENCFF608SOD.bed.gz.dvc | 100.0 B | 20f086becc75cf44ca1843c89cbdd357 |
| ENCFF608SOD.tabix.bed.gz | 784.92 KB | 4c2ced143caf55c254d5e63492a7ed22 |
| ENCFF608SOD.tabix.bed.gz.dvc | 106.0 B | 44b69791257961d4dba8f264328f3c15 |
| ENCFF608SOD.tabix.bed.gz.tbi | 272.83 KB | 0f75652625b94dae95e037a9f5d8a2a6 |
| ENCFF608SOD.tabix.bed.gz.tbi.dvc | 110.0 B | 4d5ab2e6f69b89afccaba8d17dccc49c |
| genomic_resource.yaml | 2.02 KB | 767d0021799de6b9f6b0dc26041e9398 |
| genomic_resource_original.yaml | 1.93 KB | c024f0d4f39effa2b0f032afd2beec20 |
| statistics/ |