DNase-seq_ENCSR731KDL
DNase-seq ENCSR731KDL [biosample_summary="Homo sapiens T-helper 17 cell male adult (48 years)"]
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| Id: | DNase-seq/ENCSR731KDL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR731KDL [biosample_summary="Homo sapiens T-helper 17 cell male adult (48 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (48 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF228KAA|/files/ENCFF228KAA/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.39. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR731KDL | float |
DNase-seq_ENCSR731KDL |
DNase-seq ENCSR731KDL [biosample_summary="Homo sapiens T-helper 17 cell male adult (48 years)"]
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[0.0512, 32.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF986UZO.bed.gz | 627.62 KB | 12053b3c9aebe1df0803d39a20122210 |
| ENCFF986UZO.bed.gz.dvc | 100.0 B | 8a02cdbccf567e0705b92c0ca44c5ecb |
| ENCFF986UZO.tabix.bed.gz | 573.79 KB | d3cedba33e2f49981ace1d6a477e22ae |
| ENCFF986UZO.tabix.bed.gz.dvc | 106.0 B | c5f513c7a62fa8a88f2c5da48cdf454d |
| ENCFF986UZO.tabix.bed.gz.tbi | 230.45 KB | 031173f55d873152466170ad8ea5bd8b |
| ENCFF986UZO.tabix.bed.gz.tbi.dvc | 110.0 B | 9ef160407bc031a6e92b28061a3aa215 |
| genomic_resource.yaml | 2.02 KB | 8165cd31a8e2da94505392fd650a08c1 |
| genomic_resource_original.yaml | 1.92 KB | 25b35549cc593b13c819dc203f7393e9 |
| statistics/ |