Resource

Id DNase-seq/ENCSR731KDLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR731KDL [biosample_summary="Homo sapiens T-helper 17 cell male adult (48 years)"]
Description
Labels
  • accession: ENCSR731KDL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000899/
  • biosample_summary: Homo sapiens T-helper 17 cell male adult (48 years)
  • date_created: 2021-08-23T23:11:18.015329+00:00
  • date_released: 2021-09-02
  • doi: 10.17989/ENCSR731KDL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (48 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR731KDL float

DNase-seq_ENCSR731KDL
DNase-seq ENCSR731KDL [biosample_summary="Homo sapiens T-helper 17 cell male adult (48 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR731KDL [0.0512, 32.5]
n
10,451,986
mean
3.28
sd
3.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 104519860.32% 55946
chr1 1041885 0.42% 5516
chr2 753055 0.31% 4060
chr3 560436 0.28% 3001
chr4 338703 0.18% 1838
chr5 502647 0.28% 2698
chr6 570449 0.33% 3028
chr7 504665 0.32% 2720
chr8 409499 0.28% 2198
chr9 410772 0.30% 2219
chr10 488113 0.36% 2654
chr11 549483 0.41% 2949
chr12 501455 0.38% 2665
chr13 204195 0.18% 1082
chr14 365674 0.34% 1931
chr15 342333 0.34% 1862
chr16 444622 0.49% 2349
chr17 620890 0.75% 3291
chr18 171066 0.21% 922
chr19 634919 1.08% 3301
chr20 302365 0.47% 1644
chr21 144323 0.31% 782
chr22 282723 0.56% 1563
chrX 297056 0.19% 1615
chrY 10658 0.02% 58
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 55946 1 820 186.82 180
global segment-length histogram

Files

Filename Size md5
ENCFF986UZO.bed.gz 627.62 KB 12053b3c9aebe1df0803d39a20122210
ENCFF986UZO.tabix.bed.gz 573.79 KB d3cedba33e2f49981ace1d6a477e22ae
ENCFF986UZO.tabix.bed.gz.tbi 230.45 KB 031173f55d873152466170ad8ea5bd8b
genomic_resource.yaml 2.02 KB 8165cd31a8e2da94505392fd650a08c1
statistics/