| Id: | DNase-seq/ENCSR731DJH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR731DJH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours output_type: peaks audit_warning: Alignment file {ENCFF043DEC|/files/ENCFF043DEC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 31223908 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR731DJH | float |
DNase-seq_ENCSR731DJH |
DNase-seq ENCSR731DJH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"]
|
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[0.289, 29.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF512JBD.bed.gz | 381.79 KB | 9d5284ec2c5acb11198c633365255a3a |
| ENCFF512JBD.bed.gz.dvc | 100.0 B | db64e8d476cdb08ae4c96741768859ad |
| ENCFF512JBD.tabix.bed.gz | 344.93 KB | 16cee9f390d132771b22c2d0bb6a1c67 |
| ENCFF512JBD.tabix.bed.gz.dvc | 106.0 B | 25fe385a12f2442dd0a979512f2edf8c |
| ENCFF512JBD.tabix.bed.gz.tbi | 193.34 KB | 5e7a13d11f29d777fd78929e31da6c9d |
| ENCFF512JBD.tabix.bed.gz.tbi.dvc | 110.0 B | 1d3872a220a9c2f9b5981b3e3ff3e1e3 |
| genomic_resource.yaml | 2.42 KB | aeba5c9e543ba9b57d11d370c6c4fd79 |
| genomic_resource_original.yaml | 2.2 KB | 5e81dfad182cf2d006367d9a0a1ef4e0 |
| statistics/ |