Resource

Id DNase-seq/ENCSR731DJHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR731DJH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"]
Description
Labels
  • accession: ENCSR731DJH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours
  • date_created: 2020-04-19T18:36:59.541406+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR731DJH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR731DJH float

DNase-seq_ENCSR731DJH
DNase-seq ENCSR731DJH [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL TNF-alpha for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR731DJH [0.289, 29.5]
n
6,540,614
mean
5.13
sd
4.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 65406140.20% 35075
chr1 682038 0.27% 3638
chr2 453020 0.19% 2450
chr3 358012 0.18% 1913
chr4 227708 0.12% 1214
chr5 292044 0.16% 1574
chr6 372911 0.22% 2001
chr7 292452 0.18% 1568
chr8 240606 0.17% 1326
chr9 265298 0.19% 1431
chr10 290242 0.22% 1551
chr11 338695 0.25% 1807
chr12 343216 0.26% 1808
chr13 127559 0.11% 671
chr14 230473 0.22% 1245
chr15 213949 0.21% 1182
chr16 266362 0.29% 1414
chr17 392988 0.47% 2108
chr18 102985 0.13% 571
chr19 464539 0.79% 2399
chr20 178459 0.28% 982
chr21 75033 0.16% 421
chr22 154953 0.30% 846
chrX 170760 0.11% 922
chrY 6312 0.01% 33
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 35075 3 760 186.48 180
global segment-length histogram

Files

Filename Size md5
ENCFF512JBD.bed.gz 381.79 KB 9d5284ec2c5acb11198c633365255a3a
ENCFF512JBD.tabix.bed.gz 344.93 KB 16cee9f390d132771b22c2d0bb6a1c67
ENCFF512JBD.tabix.bed.gz.tbi 193.34 KB 5e7a13d11f29d777fd78929e31da6c9d
genomic_resource.yaml 2.42 KB aeba5c9e543ba9b57d11d370c6c4fd79
statistics/