DNase-seq_ENCSR730IHD
DNase-seq ENCSR730IHD [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR730IHD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR730IHD [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF513GGQ|/files/ENCFF513GGQ/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR730IHD | float |
DNase-seq_ENCSR730IHD |
DNase-seq ENCSR730IHD [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.118, 10.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF865NAT.bed.gz | 327.86 KB | 5afcbd83466b50e7378337509e081a97 |
| ENCFF865NAT.bed.gz.dvc | 100.0 B | ea965039e72233c1e42cf8cf788a329a |
| ENCFF865NAT.tabix.bed.gz | 297.0 KB | 7c59b9bb8ed6c462071e469f06d196b4 |
| ENCFF865NAT.tabix.bed.gz.dvc | 106.0 B | 3036ece96f15117bdb930fbbb2531002 |
| ENCFF865NAT.tabix.bed.gz.tbi | 158.69 KB | 1f837d496376a54f421e4d2af2474473 |
| ENCFF865NAT.tabix.bed.gz.tbi.dvc | 110.0 B | c7163b073162eeb8197c8bf8b6d66d46 |
| genomic_resource.yaml | 2.25 KB | 66dfb31b4e8142a6c71f8e86a728a71b |
| genomic_resource_original.yaml | 2.1 KB | ee9547c67ed44e52c1cfae013a9c04de |
| statistics/ |