DNase-seq_ENCSR729TYE
DNase-seq ENCSR729TYE [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR729TYE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR729TYE [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF793FTR|/files/ENCFF793FTR/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.35. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR729TYE | float |
DNase-seq_ENCSR729TYE |
DNase-seq ENCSR729TYE [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (90 or above years)"]
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[0.0615, 14.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF488OCQ.bed.gz | 1.03 MB | 23e63bbb3e049ad4cde2d784afd94a0a |
| ENCFF488OCQ.bed.gz.dvc | 101.0 B | fc4bc0b158520eb576dc17a0c95ec261 |
| ENCFF488OCQ.tabix.bed.gz | 977.37 KB | 0d0a0d4cf4176cdc6d5e1d1c94d99c35 |
| ENCFF488OCQ.tabix.bed.gz.dvc | 107.0 B | 9fc45300873c8874b28661bc9506f7ce |
| ENCFF488OCQ.tabix.bed.gz.tbi | 258.56 KB | a2c9ada6f1dcaedc65b5f2f17fc6d9b5 |
| ENCFF488OCQ.tabix.bed.gz.tbi.dvc | 110.0 B | d104b561390296abd009e016e3e13b5e |
| genomic_resource.yaml | 2.12 KB | 3ba59b2a50d176dcfa9fefb73eb4eb37 |
| genomic_resource_original.yaml | 2.0 KB | 952ed2ce284e40d413318d49622a00a2 |
| statistics/ |