Resource

Id DNase-seq/ENCSR724INKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR724INK [biosample_summary="Homo sapiens effector memory CD4-positive, alpha-beta T cell male adult (56 years)"]
Description
Labels
  • accession: ENCSR724INK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000905/
  • biosample_summary: Homo sapiens effector memory CD4-positive, alpha-beta T cell male adult (56 years)
  • date_created: 2020-05-11T15:41:52.751937+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR724INK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (56 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR724INK float

DNase-seq_ENCSR724INK
DNase-seq ENCSR724INK [biosample_summary="Homo sapiens effector memory CD4-positive, alpha-beta T cell male adult (56 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR724INK [0.166, 93.3]
n
7,282,018
mean
8.7
sd
11.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 72820180.23% 37843
chr1 750345 0.30% 3935
chr2 485558 0.20% 2521
chr3 383917 0.19% 1998
chr4 235747 0.12% 1209
chr5 315204 0.17% 1629
chr6 428821 0.25% 2216
chr7 318657 0.20% 1662
chr8 252997 0.17% 1337
chr9 295729 0.21% 1536
chr10 317771 0.24% 1662
chr11 370667 0.27% 1948
chr12 369331 0.28% 1926
chr13 140356 0.12% 728
chr14 262452 0.25% 1366
chr15 224805 0.22% 1189
chr16 314319 0.35% 1615
chr17 464081 0.56% 2398
chr18 110175 0.14% 578
chr19 552330 0.94% 2763
chr20 202923 0.31% 1075
chr21 80860 0.17% 418
chr22 179579 0.35% 961
chrX 215972 0.14% 1123
chrY 9422 0.02% 50
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 37843 20 800 192.43 180
global segment-length histogram

Files

Filename Size md5
ENCFF863NWW.bed.gz 428.5 KB 706058edd50753a0eb3b753ff1de9376
ENCFF863NWW.tabix.bed.gz 389.66 KB caefb79605a7ada52c1a6207f40117c0
ENCFF863NWW.tabix.bed.gz.tbi 185.42 KB dbb997e1d15220ba07898e27aed51828
genomic_resource.yaml 1.31 KB 14805f012eeda25ffbd85214a174ee64
statistics/