Resource

Id DNase-seq/ENCSR722HJGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR722HJG [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (82 years)"]
Description
Labels
  • accession: ENCSR722HJG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue female adult (82 years)
  • date_created: 2020-12-10T18:27:50.232350+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR722HJG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (82 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR722HJG float

DNase-seq_ENCSR722HJG
DNase-seq ENCSR722HJG [biosample_summary="Homo sapiens head of caudate nucleus tissue female adult (82 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR722HJG [0.0734, 31.1]
n
12,684,562
mean
3.23
sd
3.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 126845620.39% 69134
chr1 1250763 0.50% 6808
chr2 907627 0.37% 5034
chr3 715010 0.36% 3886
chr4 483547 0.25% 2623
chr5 597644 0.33% 3284
chr6 666839 0.39% 3625
chr7 622930 0.39% 3413
chr8 529621 0.36% 2962
chr9 553256 0.40% 3006
chr10 591481 0.44% 3271
chr11 729748 0.54% 3956
chr12 624130 0.47% 3353
chr13 267221 0.23% 1486
chr14 411301 0.38% 2227
chr15 414882 0.41% 2278
chr16 535112 0.59% 2908
chr17 692364 0.83% 3699
chr18 230082 0.29% 1305
chr19 714908 1.22% 3692
chr20 379511 0.59% 2120
chr21 138648 0.30% 777
chr22 333327 0.66% 1830
chrX 294316 0.19% 1588
chrY 294 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69134 1 800 183.48 180
global segment-length histogram

Files

Filename Size md5
ENCFF022TLX.bed.gz 768.4 KB 73fa0bc30a43a24c58ebf9ded58a2772
ENCFF022TLX.tabix.bed.gz 693.56 KB 27815507696d7bdf4691ab0368800428
ENCFF022TLX.tabix.bed.gz.tbi 316.55 KB 92fc1f985c939136af223c21a5e38ba2
genomic_resource.yaml 1.26 KB 809caf1e85c726b22bbbe9efbdcec4cc
statistics/