Resource

Id DNase-seq/ENCSR721XAPcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR721XAP [biosample_summary="Homo sapiens inflammatory macrophage male adult (40 years)"]
Description
Labels
  • accession: ENCSR721XAP
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000863/
  • biosample_summary: Homo sapiens inflammatory macrophage male adult (40 years)
  • date_created: 2018-11-29T17:34:35.683929+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR721XAP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (40 years)
  • status: released
  • submitter_comment: This dataset was originally submitted with 2 anisogenic replicates. The second replicate has been moved to ENCSR593WXK.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR721XAP float

DNase-seq_ENCSR721XAP

DNase-seq ENCSR721XAP [biosample_summary="Homo sapiens inflammatory macrophage male adult (40 years)"]
HISTOGRAM FOR DNase-seq_ENCSR721XAP [0.0283, 35.1]
n
31,295,242
mean
2.61
sd
3.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 312952420.97% 173864
chr1 3030482 1.22% 16813
chr2 2454968 1.01% 13720
chr3 2029875 1.02% 11305
chr4 1241879 0.65% 7015
chr5 1583879 0.87% 8874
chr6 1848628 1.08% 10226
chr7 1493516 0.94% 8349
chr8 1383213 0.95% 7711
chr9 1318317 0.95% 7306
chr10 1539065 1.15% 8557
chr11 1587379 1.18% 8747
chr12 1599846 1.20% 8898
chr13 707571 0.62% 3939
chr14 1004183 0.94% 5584
chr15 1063924 1.04% 5925
chr16 1122759 1.24% 6156
chr17 1557519 1.87% 8565
chr18 618376 0.77% 3470
chr19 1301473 2.22% 6982
chr20 908914 1.41% 5091
chr21 378064 0.81% 2114
chr22 643009 1.27% 3534
chrX 848548 0.54% 4810
chrY 29855 0.05% 173
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 173864 4 800 180 180
global segment-length histogram

Files

Filename Size md5
ENCFF197BBD.bed.gz 1.9 MB 2269532866d792e86997c0a18a3f9c09
ENCFF197BBD.tabix.bed.gz 1.72 MB 1bdb6efb0b505ebc288428928669a180
ENCFF197BBD.tabix.bed.gz.tbi 515.48 KB d021bc373760054a6403d8e0bd403b4d
genomic_resource.yaml 1.35 KB 46fe95be790a032edbecefb13a701b1d
statistics/