Resource

Id DNase-seq/ENCSR721DFBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR721DFB [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR721DFB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2020-12-10T18:27:50.789540+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR721DFB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR721DFB float

DNase-seq_ENCSR721DFB
DNase-seq ENCSR721DFB [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR721DFB [0.0496, 31.9]
n
20,280,742
mean
2.18
sd
2.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 202807420.63% 106014
chr1 1903314 0.76% 9893
chr2 1612765 0.67% 8463
chr3 1183734 0.60% 6253
chr4 796515 0.42% 4168
chr5 1014052 0.56% 5355
chr6 1050247 0.61% 5512
chr7 992384 0.62% 5250
chr8 876774 0.60% 4648
chr9 883941 0.64% 4613
chr10 1007363 0.75% 5292
chr11 1160067 0.86% 6086
chr12 953296 0.72% 4929
chr13 449386 0.39% 2366
chr14 679708 0.63% 3548
chr15 701319 0.69% 3669
chr16 773033 0.86% 4065
chr17 1026401 1.23% 5278
chr18 396637 0.49% 2142
chr19 941388 1.61% 4627
chr20 644125 1.00% 3393
chr21 233083 0.50% 1243
chr22 500580 0.99% 2603
chrX 500290 0.32% 2615
chrY 340 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 106014 1 960 191.3 180
global segment-length histogram

Files

Filename Size md5
ENCFF282VAB.bed.gz 1.14 MB 4dcc010c438a29df345977251c9f7845
ENCFF282VAB.tabix.bed.gz 1.04 MB 4e7835522755a120773fcba9abc19abb
ENCFF282VAB.tabix.bed.gz.tbi 407.06 KB 89d7a9a03fdc5caac7cbe5e3c15f8523
genomic_resource.yaml 1.47 KB 69a22c8552575ecf0001a5139b426490
statistics/