Resource

Id DNase-seq/ENCSR720TCNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR720TCN [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days"]
Description
Labels
  • accession: ENCSR720TCN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000499/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days
  • date_created: 2019-08-24T00:09:22.007495+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR720TCN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR720TCN float

DNase-seq_ENCSR720TCN
DNase-seq ENCSR720TCN [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta memory T cell male adult (43 years) treated with 10 ng/mL Interleukin-2 for 5 days, anti-CD3 and anti-CD28 coated beads for 7 days"]
 HISTOGRAM FOR DNase-seq_ENCSR720TCN [0.0467, 54.7]
n
17,096,869
mean
3.64
sd
5.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 170968690.53% 87258
chr1 1645475 0.66% 8346
chr2 1404072 0.58% 7222
chr3 934291 0.47% 4795
chr4 551325 0.29% 2811
chr5 762703 0.42% 3926
chr6 931594 0.55% 4711
chr7 812070 0.51% 4223
chr8 656859 0.45% 3395
chr9 709958 0.51% 3651
chr10 847855 0.63% 4396
chr11 883810 0.65% 4506
chr12 795673 0.60% 4023
chr13 333627 0.29% 1726
chr14 628129 0.59% 3210
chr15 587781 0.58% 3027
chr16 702728 0.78% 3512
chr17 982229 1.18% 4924
chr18 278200 0.35% 1446
chr19 919591 1.57% 4535
chr20 539102 0.84% 2787
chr21 219582 0.47% 1142
chr22 465382 0.92% 2368
chrX 481600 0.31% 2457
chrY 23233 0.04% 119
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 87258 2 1000 195.93 183
global segment-length histogram

Files

Filename Size md5
ENCFF834UMI.bed.gz 969.95 KB c2324b514468dd7e958e3ebbaf7d24ad
ENCFF834UMI.tabix.bed.gz 885.95 KB 4cdce3ca2b647b810c74df8510576347
ENCFF834UMI.tabix.bed.gz.tbi 302.84 KB ec428a77b894f5193061886316d987d3
genomic_resource.yaml 1.79 KB 1a52dd97127ba155cebcfb988ec9f0bc
statistics/