DNase-seq_ENCSR720FVJ
DNase-seq ENCSR720FVJ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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| Id: | DNase-seq/ENCSR720FVJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR720FVJ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF340VDR|/files/ENCFF340VDR/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR720FVJ | float |
DNase-seq_ENCSR720FVJ |
DNase-seq ENCSR720FVJ [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)"]
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[0.0517, 17.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF403OFG.bed.gz | 878.67 KB | 9c71816424f04028ea64c27479e8f2c4 |
| ENCFF403OFG.bed.gz.dvc | 100.0 B | 45a158e392ac48f3a1bf0e722d418ab4 |
| ENCFF403OFG.tabix.bed.gz | 806.02 KB | edc46bd1390f39e45721ddbc91f15006 |
| ENCFF403OFG.tabix.bed.gz.dvc | 106.0 B | cde7594b4a9f286ff9f29146d25fb5ec |
| ENCFF403OFG.tabix.bed.gz.tbi | 257.34 KB | b81609fa420715ac1ee730ce625419f4 |
| ENCFF403OFG.tabix.bed.gz.tbi.dvc | 110.0 B | 8201c5a0c834ae6841391ed5e5b41122 |
| genomic_resource.yaml | 2.31 KB | 077cc3d352c73df652ca4a63d5a9334b |
| genomic_resource_original.yaml | 2.15 KB | bf754cee93d9c280a165c0baeedd61b3 |
| statistics/ |