DNase-seq_ENCSR718AAB
DNase-seq ENCSR718AAB [biosample_summary="Homo sapiens natural killer cell male adult (37 years)"]
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| Id: | DNase-seq/ENCSR718AAB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR718AAB [biosample_summary="Homo sapiens natural killer cell male adult (37 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF118JHP|/files/ENCFF118JHP/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL001DNS|/pipelines/ENCPL001DNS/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_internal_action: Archived analysis {ENCAN200GPV|/analyses/ENCAN200GPV/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF808HRA|/files/ENCFF808HRA/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28814796 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF118JHP|/files/ENCFF118JHP/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28568251 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR718AAB | float |
DNase-seq_ENCSR718AAB |
DNase-seq ENCSR718AAB [biosample_summary="Homo sapiens natural killer cell male adult (37 years)"]
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[4, 895] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF770IDH.bed.gz | 412.28 KB | 8392d10a91cf983e297dc7d492b579e5 |
| ENCFF770IDH.bed.gz.dvc | 100.0 B | 94cf86d25aeeaef0d0a1a7752a974839 |
| ENCFF770IDH.tabix.bed.gz | 355.54 KB | 0138c5b25fb1f56ba29f66765d40df80 |
| ENCFF770IDH.tabix.bed.gz.dvc | 106.0 B | db2304228f9c9a18dadd922805b7e42a |
| ENCFF770IDH.tabix.bed.gz.tbi | 235.41 KB | c12fe3f2691645bae0dbe1418b3d719f |
| ENCFF770IDH.tabix.bed.gz.tbi.dvc | 110.0 B | 6c28dabf337cb27ea58857323de492f1 |
| genomic_resource.yaml | 3.39 KB | 946197c637472586132d7c6be0a20ede |
| genomic_resource_original.yaml | 3.29 KB | dca7e1f892103ae818cce2a71faa734e |
| statistics/ |