Resource

Id DNase-seq/ENCSR717BBRcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR717BBR [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue male adult (90 or above years)"]
Description
Labels
  • accession: ENCSR717BBR
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue male adult (90 or above years)
  • date_created: 2020-12-10T18:27:51.002517+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR717BBR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR717BBR float

DNase-seq_ENCSR717BBR
DNase-seq ENCSR717BBR [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue male adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR717BBR [0.0466, 32.3]
n
25,082,582
mean
2.06
sd
2.98

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 250825820.78% 128943
chr1 2399427 0.96% 12206
chr2 1925492 0.80% 9996
chr3 1530971 0.77% 7873
chr4 1103824 0.58% 5706
chr5 1308082 0.72% 6723
chr6 1388218 0.81% 7131
chr7 1288275 0.81% 6670
chr8 1086935 0.75% 5683
chr9 1100805 0.80% 5628
chr10 1197515 0.90% 6163
chr11 1355538 1.00% 6948
chr12 1226967 0.92% 6267
chr13 608820 0.53% 3170
chr14 824490 0.77% 4223
chr15 808716 0.79% 4164
chr16 944146 1.05% 4875
chr17 1161112 1.39% 5899
chr18 528575 0.66% 2779
chr19 1026769 1.75% 5116
chr20 731466 1.14% 3765
chr21 279673 0.60% 1448
chr22 530009 1.04% 2717
chrX 694123 0.44% 3615
chrY 32634 0.06% 178
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 128943 1 920 194.52 189
global segment-length histogram

Files

Filename Size md5
ENCFF732WAT.bed.gz 1.4 MB fc65445fc734a56ad02f1a6bdce68f61
ENCFF732WAT.tabix.bed.gz 1.27 MB 84b0985de42f3a83bd0dcfcf3a7a5998
ENCFF732WAT.tabix.bed.gz.tbi 500.56 KB 28c0b32f21c6c0fd50f6e5ccc448a0d4
genomic_resource.yaml 1.45 KB 8b57ba25d31f205887af289bab4612dd
statistics/