Resource

Id DNase-seq/ENCSR714DIFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR714DIF [biosample_summary="Homo sapiens mesendoderm originated from H1"]
Description
Labels
  • accession: ENCSR714DIF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_NTR_0000856/
  • biosample_summary: Homo sapiens mesendoderm originated from H1
  • date_created: 2015-09-16T21:42:16.460763+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR714DIF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR714DIF float

DNase-seq_ENCSR714DIF

DNase-seq ENCSR714DIF [biosample_summary="Homo sapiens mesendoderm originated from H1"]
HISTOGRAM FOR DNase-seq_ENCSR714DIF [0.0288, 29.5]
n
55,490,709
mean
1.16
sd
1.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 554907091.72% 285272
chr1 4911943 1.97% 24901
chr2 4538350 1.87% 23456
chr3 3663597 1.85% 19089
chr4 3172290 1.67% 16584
chr5 3297815 1.82% 17026
chr6 3304289 1.93% 17013
chr7 2881938 1.81% 14938
chr8 2682384 1.85% 13830
chr9 2278145 1.65% 11634
chr10 2643727 1.98% 13594
chr11 2809104 2.08% 14379
chr12 2715464 2.04% 13860
chr13 1649935 1.44% 8606
chr14 1749164 1.63% 8917
chr15 1665895 1.63% 8513
chr16 1687825 1.87% 8606
chr17 2007111 2.41% 10098
chr18 1403550 1.75% 7278
chr19 1569397 2.68% 7698
chr20 1355862 2.10% 6918
chr21 584265 1.25% 3055
chr22 859134 1.69% 4347
chrX 1954790 1.25% 10353
chrY 104735 0.18% 579
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 285272 1 961 194.52 200
global segment-length histogram

Files

Filename Size md5
ENCFF476ZZV.bed.gz 3.02 MB 35a563069119a6ad743255d747699750
ENCFF476ZZV.tabix.bed.gz 2.76 MB d04bf4665a14e469d6c4f9299b769e5c
ENCFF476ZZV.tabix.bed.gz.tbi 820.46 KB b352682126a6f0a2cb8ff7028010f826
genomic_resource.yaml 1.18 KB 40677d05e7f07f0ea3266c39ef2f2adb
statistics/