DNase-seq_ENCSR709PZI
DNase-seq ENCSR709PZI [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (88 years)"]
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| Id: | DNase-seq/ENCSR709PZI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR709PZI [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (88 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (88 years) with Alzheimer's disease output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF707REI|/files/ENCFF707REI/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR709PZI | float |
DNase-seq_ENCSR709PZI |
DNase-seq ENCSR709PZI [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (88 years)"]
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[0.0329, 15.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF653TDA.bed.gz | 1.54 MB | 0b45451f3105054c9eb6bd8f96a038d0 |
| ENCFF653TDA.bed.gz.dvc | 101.0 B | bbc205ea4c8d454a620f9f83cc7f26b7 |
| ENCFF653TDA.tabix.bed.gz | 1.43 MB | fa75163cf9146f7b92e7027f6a45d925 |
| ENCFF653TDA.tabix.bed.gz.dvc | 107.0 B | 5bb3145a1932b6d10bab5b8513d6bc2c |
| ENCFF653TDA.tabix.bed.gz.tbi | 278.1 KB | b757698d0e05a79534ba9298960755e1 |
| ENCFF653TDA.tabix.bed.gz.tbi.dvc | 110.0 B | 3e97f9eed16a2f04531719ef40429f1f |
| genomic_resource.yaml | 2.21 KB | 8eae8665eb4ed4d409eb54cafae56b1c |
| genomic_resource_original.yaml | 2.07 KB | 16bdd390fc604366ec818c3343a335d0 |
| statistics/ |